J Korean Acad Pediatr Dent > Volume 48(3); 2021 > Article
과잉치 치수유래 줄기세포의 Real-time PCR에 의한 계대간 상아질모세포 발현 특성

초록

이 연구의 목적은 발거 된 매복 상악 과잉치에서 얻은 치수유래 줄기세포의 초기 계대와 후기 계대의 상아질모세포 유전자의 특성 을 알아보는 것이다.
전신 의과 병력이 없는 6 - 9세 사이의 남녀아이 12명에게서 서면동의를 얻고 모두 상악에 위치한 과잉치를 발거하여 당일 발거 된 과잉치의 치수세포를 채취하였다. 12개의 세포를 각각 3계대와 10계대에서 골형성 유도 분화제를 처리한 군과 처리하지 않은 군 을 나누어 실시간 중합효소 연쇄반응을 시행하여 상아질모세포의 특성을 알아보았다. 사용된 유전자는 osteonectin (ONT), alkaline phosphatase (ALP), osteocalcin (OCN), dentin matrix protein 1 (DMP-1), 그리고 dentin sialophosphoprotein (DSPP)였다.
유전자 발현양은, 분화제를 처리하지 않은 군 3계대에서는 ONT, ALP, OCN, DMP-1, DSPP순서로 많이 발현하였다. 분화제를 처리하 지 않은 군 10계대에서는 ONT, DMP-1, OCN, ALP, DSPP순으로 ONT, OCN, DSPP의 순서에는 변화가 없지만 ALP, DMP-1의 순서는 서로 바뀌었다.
이상의 결과를 종합해 볼 때, ALP와 DMP-1은 3계대와 10계대 세포의 분화를 위한 중요한 표지자로 사용될 수 있다. 과잉치 치수유 래 줄기세포는 상아질모세포의 특성을 가지며, 또한 과잉치가 어린 나이에 발거되고 10계대까지 소요되는 시간이 적게 걸린다는 것을 고려하면, 과잉치는 치아 유래 줄기세포의 공여부로서 훌륭한 활용가능성이 있음을 확인하였다.

Abstract

The aim of this study is to compare the properties of odontoblast gene of early passage cells and late passage cells derived from impacted maxillary supernumerary teeth.
Impacted supernumerary teeth with maxilla were extracted from 12 patients (8 males, 4 females) between 6 - 9 years old without medical history. Real-time polymerase chain reaction (PCR) was conducted to compare characterization of odontoblast cell in the 3rd and 10th passage, and between with bone inducing additive group and without additive group. Genes for odontoblasts characteristics are osteonectin (ONT), alkaline phosphatase (ALP), osteocalcin (OCN), dentin matrix protein 1 (DMP-1) and dentin sialophosphoprotein (DSPP).
The level of gene expression was in a decreasing order of ONT, ALP, OCN, DMP-1 and DSPP in the 3rd passage, and in decreasing order of ONT, DMP-1, OCN, ALP, and DSPP in the 10th passage in the undifferentiation and differentiation group. The order of ONT, DMP-1, and OCN did not changed. ALP and DMP-1 were switched in order.
ALP and DMP-1 may be used as important markers for differentiating between the 3rd passage and 10th passage cells.
Considering that supernumerary tooth was extracted young age and the time required to cultured 10th passage was short, supernumerary tooth can be considered a useful donor site of dental pulp stem cells.

Ⅰ. Introduction

Dentin has a pulp protection feature to form secondary dentin. The organic contents of dentin are mainly type 1 collagen and noncollagenous matrix protein[1].
During the differentiation from ectomesenchymal cell to preodontoblast to odontoblast, specific genes such as osteonectin (ONT), alkaline phosphatase (ALP), osteocalcin (OCN), dentin matrix protein 1 (DMP-1) and dentin sialophosphoprotein (DSPP) are secreted[2-4].
Various studies have been conducted on the source of stem cells related to teeth. Representative ones are wisdom teeth[5,6], deciduous teeth during the shedding period[7], and supernumerary tooth[8]. Wisdom teeth were usually extracted during adolescence, and passaging of dental pulp stem cells derived from wisdom teeth usually takes 7 - 10 days[9]. In comparison, passaging of dental pulp cells derived from supernumerary teeth takes 3 - 4 days[10]. Supernumerary teeth are usually present in the midline between the two maxillary central incisors, and are more abundant than natural teeth[11]. It is recommended to be extracted at early age as they may disrupt the eruption of adjacent teeth and induce the formation of dentigerous cyst[12,13]. Therefore, research on supernumerary teeth as a source of tooth-derived dentin pulp stem cells is necessary.
Pulp derived stem cells were able to proliferate up to 20 - 30 population doublings (PD) and maintain immunosuppressive ability[14]. More cells can be obtained from limited sources through subculture. One study reported no difference in the differentiation of mesenchymal stem cells to osteoblasts in different passages[15], whereas another study reported reduced multilineage developmental potential of marrow stromal cells as they were passaged at high concentrations[16]. However, only few studies have compared the characteristics of early and late passage cells.
This study aimed to compare the characteristics of early passage cells (3rd passage) and late passage cells (10th passage) derived from supernumerary tooth using real-time polymerase chain reaction (PCR), and investigate potential usefulness of these characteristics.

Ⅱ. Materials and Methods

1. Collection of supernumerary tooth-derived dentin pulp stem cells

12 patients aged 6 - 9 years without a medical history of systemic disorders, who visited the clinic for extraction of supernumerary teeth, participated in this study (Table 1). Extraction of supernumerary teeth for the purpose of collection of dentin pulp cells was approved by the Institutional Review Board of Dankook University Dental Hospital (H-1506/006/001), and was performed under the consent of the patients and their legal guardians.
The human dental pulp cells from 12 patients (8 males, 4 females) were run on real time-PCR. The patients underwent radiographic evaluation and/or computed tomography. Extraction was performed by an experienced technician.
Collected tissues were stored in an α-minimum essential medium (α-MEM, Gibco BRL, Grand Island, NY, USA) containing 100 U/mL of penicillin, 100 μg/mL streptomycin (Gibco BRL, Grand Island, NY, USA), 2 mM L-glutamine (Gibco BRL, Grand Island, NY, USA), 10 mM L-ascorbic acid (Sigma, St. Louis, MO, USA) and fetal bovine serum (FBS, Gibco, Life Technologies Corporation, Carlsbad, Calif., USA) immediately after the tooth extraction to minimize cell loss. They were then moved to the laboratory for collection of human dental pulp cells.

2. Cell separation and cultivation

For cell extraction, a sterile high-speed cutting machine was used to section the supernumerary teeth below the cementoenamel junction under sterile distilled water without exposing the dental pulps. Teeth were then broken to expose the dental pulps. The exposed dental pulps were collected using a sterile file.
Supernumerary dental pulp stem cells (sDPSCs) were obtained via enzymatic digestion of the collected pulp tissues[17]. After cutting the tissues into 1 mm3 pieces, they were placed in a shaking incubator at 37°C with 3 mg/mL of type 1 collagenase (Sigma-Aldrich Co., St. Louis, M.O., USA) and 4 mg/mL of dispase (Sigma-Aldrich Co., St. Louis, M.O., USA) for 1 hour for cell separation. Next, cells isolated with a 70 μm Falcon strainer (CORNING Inc., N.Y., USA) were filtered and cultured in a α-MEM medium containing 20% FBS (Gibco, Life Technologies Corporation, Carlsbad, Calif., USA), 100 U/mL penicillin, 100 μg/mL streptomycin (Gibco BRL), 2 mM L-glutamine (Gibco BRL) and 10 mM L-ascorbic acid (Sigma, St. Louis, MO, USA) at 37°C and 5% CO2 for 4 - 6 days until 70 - 80% confluency was achieved. The obtained cells were named sDPSCs. The medium was replaced every 2 - 3 days starting 48 hours after the primary culture. Any floating materials that did not attach to the growth medium were rinsed off with phosphate buffer saline. When the 80% of the medium was covered by cells, the cells were isolated using trypsin-EDTA (CORNING Inc., N.Y., USA). Then, the medium was divided into four sections, in each of which the cells were subcultured for 10 passage.

3. Hard tissue formation and cell differentiation

To evaluate the differentiation of supernumerary tooth-derived dental pulp stem cells into osteoblastoma, osteoblastoma were cultured in growth media until the 3rd passage or 10th passage. To induce differentiation into osteoblastoma, each sample of stem cells was cultured in a growth medium containing a mixture of 10mL α-MEM and 10% FBS (Gibco, Life Technologies Corporation, Carlsbad, Calif., USA), and a mixture of 5 mM β-glycerophosphate (Sigma-Aldrich Co., St. Louis, M.O., USA), 100 nM dexamethasone (Sigma-Aldrich Co., St. Louis, M.O., USA) and 100 μM ascorbic acid (Sigma-Aldrich Co., St. Louis, M.O., USA). Each medium was replaced every 3 days, and differentiation was induced for 8 days[10].

4. Total RNA extraction and cDNA synthesis

Total RNA extraction was performed using Easy-spin total RNA extraction Kit (iNtRON Biotechnology, Gyeonggi-do, Korea). Then, Nanodrop ND-2000® (Thermo Scientific, Waltham, MA, USA) spectrophotometer was used to quantify total RNA. For synthesis of cDNA, 1 µg of total RNA was added to quantitative polymerase chain reaction reverse transcription (qPCR RT). Master Mix kit (TOYOBO Co., Osaka, Japan) containing oligo (dT) 15 primer, and nuclear-free water was added to make the total volume 20 µl. Then, PCR was ran for 5 minutes at 65°C, 5 minutes at 4°C, and 5 minutes at 95°C.

5. Real-time polymerase chain reaction

To study patterns of mRNA expression through real-time PCR, 4 samples were prepared: additive-treated in 3rd passage and 10th passage cells (differentiation group), and non-additive-treated in 3rd passage and 10th passage cells (undifferentiation group). Then, mRNA expression patterns of the ALP, OCN, ONT, DMP-1, and DSPP genes, which are associated with hard tissue formation, were analyzed. The comparison of levels of mRNA expression before and after the cell differentiation was made relative to the level of glyceraldehyde 3-phosphate dehydrogenase (GADPH) mRNA expression. cDNA was diluted with sterile distilled water until the total mass of the sample reached 25 ng. Then, the sample was reacted with 0.5 μL of forward and reverse primers (10 pmol/μL) each and 2 × 5 μL SYBR Premix Ex Taq™ (Bio-Rad Laboratories, Hercules, C.A., USA) in StepOnePlus™ Real-time PCR (AB Applied Biosystems by life Technology, Waltham, M.A., USA) for amplification and fluorescence detection. The cDNAs were denatured at 95°C for 20 seconds, and annealed at the optimal temperature of the primers for 1 minute. This process was repeated for 40 cycles. Next, the cDNAs were dissociated at 65 - 95°C, and their melting curve was analyzed. Whether the melting curve exhibited a single maximal point was checked, indicating production of only one PCR product. The conditions of the primers used in the study are shown in Table 2. Collected data were analyzed using StepOnePlus™ (AB Applied Biosystems by life Technology, Waltham, M.A., USA).

6. Statistical analysis

The real-time PCR samples were statistically analyzed 3 times each. The mean and standard errors were calculated for each sample. For comparison of relative levels of mRNA of each gene, a 2-△△CT method was used with GAPDH as the internal control gene[18]. To compare relative levels of mRNA between the 3rd passage and 10th passage in the differentiation and undifferentiation groups, a Mann-Whitney U test (p < 0.05) was performed using SPSS (version 23.0, Chicago, USA). Differences in the relative levels of mRNA of each gene before and after the additive treatment in the 3rd passage and 10th passage were found by performing a Wilcoxon signed rank test (p < 0.05) using SPSS (version 23.0, Chicago, USA).

Ⅲ. Results

The media were 70 - 80% confluent with sDPSCs after 4 - 6 days of primary culture, and the sDPSCs were subcultured to the next passage.
Ct values of the ALP, OCN, ONT, DMP1, and DSPP genes, as well as GAPDH used as the housekeeping gene were obtained. Then, △Ct (threshold cycle) values (target gene - housekeeping gene) were calculated to find the relative levels of gene expression. Fig. 1 shows the △Ct values for 3rd and 10th passage group in the undifferentiation group. The smaller the △Ct value, the higher the number of genes included in the specimen. In 3rd passage, △Ct value of the ONT gene was the lowest, and that of the DSPP gene was the highest in both the 3rd and 10th passage. In the undifferentiation group, △Ct values of the OCN, ONT, and DMP-1 genes decreased, and those of the ALP and DSPP genes increased in both of 3rd and 10th passage.
Mann-Whitney U test showed no significant difference in the level of expression of the ALP gene, and significant differences in the levels of all the other proteins between the two passages (p < 0.05). Among the four genes that showed significant differences between the two passages, only the DSPP gene was expressed in a decreasing number of cells as they were subcultured until the 10th passage, while the OCN, ONT, and DMP-1 genes were expressed in a greater number of cells.
Fig. 2 shows the △Ct values for 3rd and 10th passage group in the differentiation group. In the differentiation group, △Ct value of the ONT gene was the lowest, and that of the DSPP gene was the highest in both the 3rd and 10th passage. △Ct values decreased for the OCN, ONT, DMP-1, and DSPP genes, while that of ALP increased slightly. Mann-Whitney U test showed no significant differences in the level of expression of the ALP gene between the two passages (p < 0.05), whereas significant differences in that of the OCN, ONT, DNP-1 and DSPP genes were found between the two passages.
Fig. 3 shows the △Ct values before and after additive treatment for 3rd passage group. As a result of comparing before and after additive treatment at 3rd passage, △Ct values decreased for the ALP, OCN, ONT, and DMP-1 genes, while that of DSPP increased.
Wilcoxon signed rank test showed significant differences in the level of expression of the ALP, DMP-1, and DSPP genes before and after the additive treatment in the 3rd passage (p < 0.05). No significant difference was found in the level of expression of the OCN and ONT genes (p > 0.05). Therefore, the level of expression of the ALP and DMP-1 genes increased, and that of the DSPP gene decreased after the additive treatment in the 3rd passage.
Fig. 4 shows the △Ct values before and after additive treatment for 10th passage group. At 10th passage, every △Ct values decreased after additive treatment.
Wilcoxon signed rank test showed statistically significant differences in the levels of expression of the OCN, ONT, DMP-1, and DSPP genes before and after the additive treatment (p < 0.05). No significant difference in the level of expression of the ALP gene was found (p > 0.05). Therefore, the level of expression increased for all genes except for the ALP gene in the 10th passage.
Table 3 shows the order of relative levels of gene expression. The level of gene expression was in a decreasing order of ONT, ALP, OCN, DMP-1 and DSPP in the 3rd passage, and in decreasing order of ONT, DMP-1, OCN, ALP, and DSPP in the 10th passage in the undifferentiation group. While the order of ONT, OCN and DSPP did not changed, ALP and DMP-1 were switched in order. Similar observation was made in the differentiation group.
Comparing the results before and after differentiation, in 3rd passage, gene expression was in a decreasing order of ONT, ALP, OCN, DMP-1, DSPP in both differentiation, undifferentiation group. Also, in 10th passage, gene expression was in a decreasing order of ONT, DMP-1, OCN, ALP, DSPP in both differentiation, undifferentiation group. Meanwhile, in total, ONT, OCN, DSPP had no change in order, but the order of ALP and DMP-1 changed.

Ⅳ. Discussion

The purpose of this study is to find out the characteristics between relatively early passage (3rd passage) and late passage (10th passage) using real-time PCR in supernumerary dental pulp stem cells derived from maxillary supernumerary tooth.
Since Gronthos et al .[5] revealed that adult stem cells obtained from the pulps of erupted wisdom teeth have characteristics of bone marrow derived stem cells, teeth have become a research target of many studies as a source of adult stem cells. Examples of stem cells may be obtained include stem cells from exfoliated deciduous teeth (SHED)[7], periodontal ligament stem cells (PDLSCs)[19], dental follicle precursor cells (DFPCs)[20], stem cells from apical papilla (SCAP)[21], and supernumerary teeth[8].
The prevalence rate of supernumerary teeth varies from 1.0 - 3.5%. Supernumerary teeth must be extracted at early age as they may cause pathological problems due to delayed eruption of adjacent permanent teeth, orthodontic problems related to teeth rotation, and formation of dentigerous cysts[22]. Extraction of supernumerary teeth provides an opportunity to obtain young stem cells from these teeth.
Therefore, in this study, cells of 3rd passage, which are most widely used in adult stem cell studies, and cells of 10th passage, which are considered to be relatively late, were obtained and treated with additive for 8 days to induce hard tissue formation. To confirm the characteristics of each of passage, and before and after differentiation, the amount of mRNA gene expression of ALP, OCN, ONT, DMP-1 and DSPP mainly found in odontoblasts was measured using real-time polymerase chain reaction analysis.
The value obtained from the real-time polymerase chain reaction is the threshold cycle. This value refers to the number of cycles in the fluorescence signal representing the threshold value and the contact point due to the significant increase in the amplification curve[18]. In this study, the results were analyzed using the relative quantification method proposed by Livak and Schmittgen[18]. GAPDH was used as a housekeeping gene.
In study comparing stem cells derived from pulp cells and periodontal ligament cells, the pulp cells expressed DSPP, whereas the periodontal ligament cells did not express DSPP[23].
In addition, after Gronthos et al .[14] found that pulp-derived stem cells can proliferate over at least 20 - 30 population doublings, can safely be stored frozen, and have immunosuppressive properties, more cells can be obtained through subculture and the range of utilization has increased. However, there was also a previous study revealing that when the mesenchymal stem cells were subcultured at a high concentration, the cell morphology was same as the passage increased, but the pluripotency of the cells decreased[16]. In case of mesenchymal stem cells, after treatment with a differentiating agent that induces hard tissue formation, there was little effect from subculture, but there were conflicting opinions that the differentiation ability decreased by subculture in inducing differentiation into adipocytes[24].
Dentin can form secondary dentin even after differentiation is over. Odontoblast plays the main role[25]. During the differentiation from ectomesenchymal cell to preodontoblast to odontoblast, preodontoblast mainly form ONT, ALP, and OCN[26], and differentiated odontoblast form DSPP, DMP-1, DMP-2, DMP-4, bone sialoprotein (DSP), matrix extracellular phosphorylated protein (MEPE) and osteopontin (OPN)[2,3].
ONT is a phosphorylated glycoprotein synthesized by various cells including osteoblasts[27]. ONT is observed in non-calcified tissues such as the periodontal ligaments and pulps of pig and cow[28]. In human, the ONT gene is expressed during early stages of differentiation into osteoblasts, or in preosteoblasts[4]. Therefore, it is expressed to a greater degree in preodontoblasts within he tooth germ than in erupted teeth[29]. In this study, the ONT gene was expressed the most in both the 3rd and 10th passage. This is consistent with the findings of previous studies in which the ONT gene was expressed at relatively early stages of differentiation. The level of expression of the ONT gene increased 8.03 folds in the undifferentiation group and 11.40 folds in the differentiation group from the 3rd passage to 10th passage. The level of expression of the ONT gene increased 1.94 folds in the 3rd passage, and 2.82 folds in the 10th passage after the additive treatment. Since the level of expression of the ONT gene did not significantly increase when differentiation into odontoblasts was induced, the result of this study is consistent with those of previous studies, which reported that ONT is synthesized in preodontoblasts.
ALP is an ectoenzyme consisting of glycoproteins, which are present in various tissues within the body[30]. Its expression increases during the formation of mineralized tissues[31]. ALP gene was decreased to 0.71 times and 0.84 times the level in the 3rd passage in the undifferentiation and in the differentiation group, respectively. The level of expression of the ALP gene increased 8.91 folds and 4.52 folds in the 3rd passage and 10th passage, respectively, after the additive treatment. As can be seen, the level of expression of the ALP gene was not significantly affected as the number of passage increased, and significantly increased after additive treatment.
OCN is a biomarker found after cementoblast and odontoblast differentiation, and can be used to evaluate the degree of differentiation. It also controls the degree of mineralization[32,33]. In this study, the OCN gene was expressed to the 3rd highest degree among the five genes of interest in both the 3rd and 10th passage. This supports the results of previous studies that the OCN gene is expressed after cells have differentiated into odontoblasts, and that OCN may be used as a marker for measuring the degree of differentiation. The level of expression of the OCN gene increased 7.42 folds and 14.29 folds between the 3rd passage and the 10th passage in the differentiation and undifferentiation group, respectively. Therefore, the level of expression of the OCN gene increased as the cells reached the 10th passage. The level of expression of the OCN gene increased 1.56 folds and 3.01 folds in the 3rd passage and 10th passage, respectively, after the additive treatment. The level of OCN gene expression was not significantly affected by the additive treatment.
DMP-1 is an acid phosphatase found in the dental pulp. It is not found in osteoblasts, and is characteristically produced in bone cells embedded in the bone matrix[34]. It usually appears after the bud stage unlike DSPP, which appears at the cap stage[35]. In this study, the level of DMP-1 gene expression increased 323.54 folds between the 3rd passage and the 10th passage in the undifferentiation group, marking the highest increase among the five genes of interest. It also increased 494.14 folds in the differentiation group. DMP-1 may be used as an important marker during identification of characteristics of cells through different stages of passaging in future studies. The level of expression of the DMP-1 gene increased 2.81 folds and 4.30 folds in the 3rd passage and 10th passage, respectively, after the additive treatment. Therefore, the level of DMP-1 gene expression was not significantly affected by the additive treatment.
DSPP is a non-collagenous protein, and a prominent example of pulp-specific gene[36]. Dentin sialoprotein (DSP), dentin phosphoprotein (DPP) and dentin glycoprotein (DGP) are all synthesized from the DSPP gene. DPP is a product of C-terminal specific DSPP degradation, and DSP is a product of N-terminal specific DSPP degradation[37]. DSPP induces calcification of the dental pulp along with ALP and OCN[36,37]. In this study, the level of expression of the DSPP gene was reduced to 0.39 times the level in the 3rd passage in the 10th passage in the undifferentiation group. In the differentiation group, the level increased 2.72 folds in the 10th passage. Since the absolute level of expression of the DSPP gene was the lowest among the five genes of interest, it can be predicted that its level of expression will increase after the 10th passage. In the 3rd passage, the level of expression of the DSPP gene was reduced to 0.50 times the initial level after the additive treatment. The level increased 3.55 folds in the 10th passage after the additive treatment. It was therefore observed that the level of DSPP gene expression tended to decrease in the 3rd passage, and then increase in the 10th passage.
The level of mRNA expression was in decreasing order of ONT, ALP, OCN, DMP-1, and DSPP in the 3rd passage, and ONT, DMP-1, OCN, ALP, and DSPP in the 10th passage. While the order of ONT, OCN, and DSPP was unchanged, ALP and DMP-1 were switched to the 4th and 2nd highest, respectively. A similar pattern was observed for the differentiation group. Regardless of the treatment with differentiation agents, ONT, OCN, and DSPP were the 1st, 3rd, and 5th most expressed, and the order of ALP and DMP-1 was changed in the 2nd and 4th order. From this, it is thought that ALP and DMP-1 could be important markers that distinguish between the 3rd and 10th passage.
Based on the findings above, sDPSCs have characteristics of odontoblasts in both the 3rd and 10th passage. Therefore, sDPSCs may be useful in studies in which differentiation into a certain type of tissue is induced by making use of the passage-specific expression of proteins.

Ⅴ. Conclusion

This study investigated the degree to which tooth-derived dental pulp stem cells exhibit characteristic gene expression of odontoblasts before and after additive treatment in 3rd and 10th passage using real-time PCR. Gene expression of these stem cells is conserved across both passages, and that the two passages can be differentiated based on the level of expression of the ALP and DMP-1 gene.
Based on this finding that sDPSCs have gene expression patterns of odontoblasts in both the 3rd and 10th passage, wide application of sDPSCs may become possible after sufficient research conducting their potential to differentiate into other types of tissues other than teeth.

Fig 1.
Mean value of △Ct (X-H) between 3P and 10P in undifferentiation.
p value from Mann-Whitney U test
ONT: Osteonectin, ALP: Alkaline phosphatase, OCN: Osteocalcin, DMP-1: Dentin Matrix Protein 1, DSPP: Dentin sialophosphoprotein, P: Passage, △Ct(X-H): Target gene - Housekeeping gene
jkapd-48-3-291f1.jpg
Fig 2.
Mean value of △Ct (X-H) between 3P and 10P in differentiation.
p value from Mann-Whitney U test
ONT: Osteonectin, ALP: Alkaline phosphatase, OCN: Osteocalcin, DMP-1: Dentin Matrix Protein 1, DSPP: Dentin sialophosphoprotein, P: Passage, △Ct(X-H): Target gene - Housekeeping gene
jkapd-48-3-291f2.jpg
Fig 3.
Mean value of △Ct (X-H) between differentiation and undifferentiation in 3rd passage.
p value from Wilcoxon signed rank test
ONT: Osteonectin, ALP: Alkaline phosphatase, OCN: Osteocalcin, DMP-1: Dentin Matrix Protein 1, DSPP: Dentin sialophosphoprotein, P: Passage, △Ct(X-H): Target gene - Housekeeping gene
jkapd-48-3-291f3.jpg
Fig 4.
Mean value of △Ct (X-H) between differentiation and undifferentiation in 10th passage.
p value from Wilcoxon signed rank test
ONT: Osteonectin, ALP: Alkaline phosphatase, OCN: Osteocalcin, DMP-1: Dentin Matrix Protein 1, DSPP: Dentin sialophosphoprotein, P: Passage, △Ct(X-H): Target gene - Housekeeping gene
jkapd-48-3-291f4.jpg
Table 1.
Baseline characteristics of patient population
Sample Number Age Gender Direction Shape
SNT1 7 Male Invert Conical
SNT2 6 Male Invert Conical
SNT3 6 Female Invert Conical
SNT4 8 Male Invert Conical
SNT5 9 Male Invert Conical
SNT6 7 Male Invert Conical
SNT7 6 Female Invert Conical
SNT8 6 Female Normal Tubercle
SNT9 7 Male Invert Tubercle
SNT10 7 Female Invert Conical
SNT11 6 Male Invert Conical
SNT12 7 Male Invert Conical
Average 6.83 ± 0.94

SNT=Supernumerary tooth

Table 2.
Annealing temperatures for the primer sequences used for the real time quantitative PCR/RT-qPCR
Gene Sequence of Primer (5’- 3’) Annealing Temp (℃)
GAPDH forward GGAGTCCACTGGCGTCTTCAC 57
reverse GCTGATGATCTTGAG GCTGTTGTC
ALP forward CTTGACCTCCTCG GAAGACACTC 60
reverse CGCCCACCAC CTTGTAGCC
OCN forward CCTCA CACTCCTCGCCCTATTG 57
reverse CGCTG CCCTCCTGCTTGG
ONT forward AGGAG GTGGTGGCGGAAAATC 55
reverse GTGG CAAAGAAGTGGCAGGAAG
DMP-1 forward CA GGAAGAGGTGGTGAGTGAGTC 63
reverse CTG GATTCGCTGTCTGCTTGC
DSPP forward CAG TACAGGATGAGTTAAATGCCAGTG 64
reverse CCATTCCCTTCTCCCTTGTGACC

GAPDH=Glyceraldehyde 3-Phosphate Dehydrogenase, ALP=Alkaline Phosphatase, OCN=Osteocalcin, ONT=Osteonectin, DMP-1=Dentin Matrix Acidic Phosphoprotein 1, DSPP=Dentin Sialophosphoprotein

Table 3.
The order of relative amount of mRNA expression in real-time polymerase chain reaction
1 2 3 4 5
U 3P ONT ALP OCN DMP-1 DSPP
10P DMP-1 ALP
D 3P ONT ALP OCN DMP-1 DSPP
10P DMP-1 ALP
3P U ONT ALP OCN DMP-1 DSPP
D
10P U ONT DMP-1 OCN ALP DSPP
D

U=Undifferentiation, D=Differentiation, P=Passage, ALP=Alkaline Phosphatase, OCN=Osteocalcin, ONT=Osteonectin, DMP-1=Dentin Matrix Acidic Phosphoprotein 1, DSPP=Dentin Sialophosphoprotein

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